Primekg Mcp
What is Primekg Mcp
primekg-mcp is an MCP Server designed to import the Precision Medicine Knowledge Graph (PrimeKG) into a Neo4j database for data analysis and exploration. It integrates a vast amount of biomedical data to facilitate research in precision medicine.
Use cases
Use cases for primekg-mcp include academic research in biomedical fields, data analysis for healthcare applications, and exploration of disease relationships and biomedical data integration.
How to use
To use primekg-mcp, users will need to set up the environment by configuring the necessary files and downloading the PrimeKG dataset. After setup, users can utilize the provided tools for data querying and analysis within the Neo4j database.
Key features
Key features of primekg-mcp include the ability to download and process PrimeKG data, import it into a Neo4j graph database, and provide utility scripts for data processing and querying.
Where to use
primekg-mcp is primarily used in the biomedical research field, particularly in precision medicine, where it aids in understanding diseases and their relationships through a comprehensive knowledge graph.
Clients Supporting MCP
The following are the main client software that supports the Model Context Protocol. Click the link to visit the official website for more information.
Overview
What is Primekg Mcp
primekg-mcp is an MCP Server designed to import the Precision Medicine Knowledge Graph (PrimeKG) into a Neo4j database for data analysis and exploration. It integrates a vast amount of biomedical data to facilitate research in precision medicine.
Use cases
Use cases for primekg-mcp include academic research in biomedical fields, data analysis for healthcare applications, and exploration of disease relationships and biomedical data integration.
How to use
To use primekg-mcp, users will need to set up the environment by configuring the necessary files and downloading the PrimeKG dataset. After setup, users can utilize the provided tools for data querying and analysis within the Neo4j database.
Key features
Key features of primekg-mcp include the ability to download and process PrimeKG data, import it into a Neo4j graph database, and provide utility scripts for data processing and querying.
Where to use
primekg-mcp is primarily used in the biomedical research field, particularly in precision medicine, where it aids in understanding diseases and their relationships through a comprehensive knowledge graph.
Clients Supporting MCP
The following are the main client software that supports the Model Context Protocol. Click the link to visit the official website for more information.
Content
PrimeKG to Neo4j
This project imports the Precision Medicine Knowledge Graph (PrimeKG) into a Neo4j database for data analysis and exploration.
Overview
PrimeKG is a comprehensive biomedical knowledge graph that integrates 20 high-quality biomedical resources to describe 17,080 diseases with over 4 million relationships across ten major biological scales.
This project:
- Downloads and processes PrimeKG data
- Imports the data into a Neo4j graph database
- Provides tools for querying and analyzing the data
Project Structure
primekg-mcp/ ├── config/ # Configuration files ├── data/ # Data files (PrimeKG data will be stored here) ├── docs/ # Documentation ├── scripts/ # Utility scripts for data processing ├── src/ # Source code │ ├── db/ # Database connection and queries │ ├── etl/ # Data extraction, transformation, loading │ └── utils/ # Utility functions └── tests/ # Test files
Setup Instructions
(Setup instructions will be added as the project progresses)
Usage
(Usage instructions will be added as the project progresses)
License
(License information will be added)
Dev Tools Supporting MCP
The following are the main code editors that support the Model Context Protocol. Click the link to visit the official website for more information.
