Pubmed Mcp Server
What is Pubmed Mcp Server
The PubMed MCP Server is a service built on FastAPI that provides an interface for accessing the PubMed database. It allows users to search for PubMed articles, retrieve article metadata, and download PDF files of PMC articles.
Use cases
Use cases for the PubMed MCP Server include researchers searching for relevant literature, healthcare professionals accessing medical articles, and developers integrating PubMed data into applications.
How to use
To use the PubMed MCP Server, clone the repository, install the required dependencies, create and activate a virtual environment, configure the environment variables, and run the server using the command ‘uv run main.py’. The server will run at http://localhost:8977.
Key features
Key features of the PubMed MCP Server include article search functionality based on keywords, retrieval of detailed metadata for specific PubMed IDs, and the ability to download PDF files of PMC articles.
Where to use
The PubMed MCP Server can be used in fields such as biomedical research, academic publishing, and healthcare, where access to scientific literature is essential.
Clients Supporting MCP
The following are the main client software that supports the Model Context Protocol. Click the link to visit the official website for more information.
Overview
What is Pubmed Mcp Server
The PubMed MCP Server is a service built on FastAPI that provides an interface for accessing the PubMed database. It allows users to search for PubMed articles, retrieve article metadata, and download PDF files of PMC articles.
Use cases
Use cases for the PubMed MCP Server include researchers searching for relevant literature, healthcare professionals accessing medical articles, and developers integrating PubMed data into applications.
How to use
To use the PubMed MCP Server, clone the repository, install the required dependencies, create and activate a virtual environment, configure the environment variables, and run the server using the command ‘uv run main.py’. The server will run at http://localhost:8977.
Key features
Key features of the PubMed MCP Server include article search functionality based on keywords, retrieval of detailed metadata for specific PubMed IDs, and the ability to download PDF files of PMC articles.
Where to use
The PubMed MCP Server can be used in fields such as biomedical research, academic publishing, and healthcare, where access to scientific literature is essential.
Clients Supporting MCP
The following are the main client software that supports the Model Context Protocol. Click the link to visit the official website for more information.
Content
PubMed MCP Server
项目简介
PubMed MCP Server 是一个基于 fastapi-mcp 的服务，提供了对 PubMed 数据库的访问接口。该服务允许用户搜索 PubMed 文章、获取文章元数据以及下载 PMC 文章的 PDF 文件
基本功能:
- 搜索文章：根据关键词搜索 PubMed 数据库中的文章
- 获取元数据：获取特定 PubMed ID 的文章详细信息，包括标题、摘要、作者、关键词等
- 下载 PDF：下载 PMC 文章的 PDF 文件到本地
安装与配置
- 克隆仓库
git clone https://github.com/yourusername/pubmed-mcp-server.git
cd pubmed-mcp-server
# 安装 uv 工具，用于管理虚拟环境和依赖项同步
pip install uv
- 创建并激活虚拟环境
uv sync
source .venv/bin/activate # Linux/Mac
# 或
.venv\Scripts\activate # Windows
配置
创建 .env 文件来自定义配置：
DOWNLOAD_PATH=/path/to/store/pdfs
默认情况下，PDF 文件将保存在 /tmp/pubmed-pdfs 目录下。
使用方法
uv run main.py
服务器将在 http://localhost:8977 上运行。
然后你可以在 mcp client 中配置这个endpoint，并使用SSE模式
项目结构
. ├── app/ # API 应用定义 │ └── pubmed.py # PubMed API 端点 ├── core/ # 核心功能 │ └── config.py # 配置管理 ├── service/ # 服务层 │ ├── __init__.py # 基础 URL 和工具函数 │ ├── file.py # 文件下载功能 │ └── search.py # PubMed 搜索和解析功能 ├── tests/ # 测试目录 ├── .env # 环境变量配置 ├── main.py # 应用入口 └── pyproject.toml # 项目依赖
许可证
本项目采用 MIT 许可证。详情请参阅 LICENSE 文件。
Dev Tools Supporting MCP
The following are the main code editors that support the Model Context Protocol. Click the link to visit the official website for more information.
